I stopped the process while I was debugging it. I found the issue and corrected.
System is up and running again and, fingers crossed, everything is happy now.
There still is an inherit logic error with the display of the checkboxes. By Default they are always on. They are only saved when you subscribe. As soon as you uncheck the "Subcribe to this Post" it unsubscribes your information removing it from the database so it goes back to showing the defaults after the reply box. I will have to look into this further next week.
The Subscriptions Page will show the forum posts you are subscribed to along with if you are receiving email updates to the post.